Jeffrey Chau

Hi, I tried and had the same issue. but I found a new link that seemed to have worked git clone https://git.savannah.gnu.org/git/parallel.git

To update, I have rerun everything with a brand new snakemake file and have still encountered the same error message. I have allotted 400G of memory to run this and...

Hi Nick, I have repeated the drop pipeline and it keeps failing at the same point, which is the 04_fit_hyperparameters_FraseR.R error message. Perhaps there is something wrong with my config.yaml...

Dear Vicente, Here is the output for `free -m -h # look at the Mem row` total used free shared buff/cache available Mem: 125G 12G 9.1G 172M 104G 111G `lscpu`...

Dear Vicente, The same error message showed up. [Sat Nov 20 11:00:19 2021] Error in rule AberrantSplicing_pipeline_FRASER_04_fit_hyperparameters_FraseR_R: jobid: 498 output: /paedbc01/disk1/home/rnaseq/drop_HKU_all/Output_20211116/processed_data/aberrant_splicing/datasets/savedObjects/all/hyper.done log: /paedbc01/disk1/home/rnaseq/drop_HKU_all/.drop/tmp/AS/all/04_hyper.Rds (check log file(s) for error message) RuleException:...

Here is the result `> fds2 dim(fds2) [1] 1259559 117`

This is the generated result and error message. Thanks ``` > fds3

Hi, I am currently having the same problem. Is the issue solved via running -v on the initial BAM file generation step?