Jake

Sure, here is a UMAP with and without the quantile cutoff from the Seurat tutorial: ``` SeuratData::InstallData("pbmc3k") library(Seurat) library(SeuratData) library(ggplot2) library(patchwork) data("pbmc3k.final") FeaturePlot(pbmc3k.final, features = c("PTPRCAP"), min.cutoff = "q10", max.cutoff...

Yes, I believe that is how both Seurat and Scanpy do it. From the Scanpy docs (https://scanpy.readthedocs.io/en/stable/generated/scanpy.pl.umap.html#scanpy.pl.umap): > vmin : Union[str, float, Callable[[Sequence[float]], float], Sequence[Union[str, float, Callable[[Sequence[float]], float]]], None] (default:...