Jerome Kelleher
Jerome Kelleher
We should provide simple methods for reading/writing RateMaps in binary and text formats. These should use numpy methods only, we don't need anything like zarr here. This is separate to...
We should add some benchmarks to the ASV suite (#1165) so we can track the performance of the various mutate functions. These should be a lot faster than simulations, so...
In #1573 we added the idea of a "duration" to ancestry models, which determines the maximum amount of time we can run. There was also some clarification in the docs...
Since #1573 the SweepGenicSelection model will raise an error if we try to set a ``duration`` or ``end_time`` that happens to be less than the completion time for the model....
This will save us a bit of memory on large simulations.
We have an extra unused parameter in the get_ll_representation for each DemographicEvent class. This is needed because stdpopsim will uses this until msprime 1.0 is released. Stdpopsim should then transition...
Implement inversions following the ARG model of http://www.nature.com/hdy/journal/v111/n3/full/hdy201338a.html Should be done at the same time as #11.
A very common pattern in genetic analysis is to assume that there is exactly two alleles at each variant site. Datasets are then forced to be biallelic by conversion. I...
Anyone object to us adding [tskit](https://tskit.readthedocs.io/en/latest/) as an import format, so we have an ``sgkit-tskit`` repo? I'm happy to do the coding here, and I think it'll be a useful...
One of the key things we need for CZI EOSS application (#533) is a roadmap. What's the standard approach to this? (Maybe a ROADMAP.md file?) The layout suggested [here](https://mozillascience.github.io/working-open-workshop/roadmapping/) seems...