Jerome Kelleher
Jerome Kelleher
We don't see the version of msprime that the docs are for any more - something has change in the JupyterBook config. This may be an issue with the upstream...
Currently we say that Python 3.7+ is required, but we're now on Python 3.8+. We should be able to define a replacement macro for ``min_python_version`` in the docs config yaml,...
A natural addition to being able to keep a record of all genomes that we simulate through (i.e. keeping unary #2128 ) is to keep a record of the nodes...
A few different people have been asking about how we keep more information about sweeps in the SweepGenicSelection. It's not entirely clear to me how we do this, but here...
In #2157 we decided to add a boolean flag ``stop_at_local_mrca`` which states whether we should keep simulating the ancestry of genome segments after an mrca has been reached. We also...
We currently track all breakpoints during the simulation using an AVL tree. We should profile once #2121 is done and see if this is a significant amount of our time....
Turning off the numba cache seems to cause our CI builds to fail when running tests in NOJIT mode (which we use to get coverage of jitted functions). Seems quite...
This is causing persistent problems, with cryptic segfaults being really really hard to debug with Dask (I just lost a whole morning to it!). We have to turn off the...
Through developing the alternative implementation of vcf-to-zarr conversion in #1185 I think there's some bugs in how we're currently handling missing data. Opening this PR for discussion purposes. There's some...