Giulio Ermanno Pibiri
Giulio Ermanno Pibiri
Are we talking about this https://github.com/jermp/fulgor/blob/main/tools/pseudoalign.cpp#L38 as "batch size"? As @rob-p suggested, could you @tbenavi1 try to set this value to one and see how the parallelism behave? Thanks! Ok,...
Yes, you're right. Indeed, I'm not sure either how to control the batch size which could be an internal state of the parallel parser we are using. Surely @rob-p knows...
Looking here https://github.com/jermp/fulgor/blob/main/tools/pseudoalign.cpp#L115, it seems like you can pass the chunk size as a parameter for the constructor of the parser. So, this line https://github.com/jermp/fulgor/blob/main/tools/pseudoalign.cpp#L115 should be replaced by, I...
Hi @tbenavi1, have you had any luck regarding this? In particular, have you tried the thing in my previous message? Please, let us know. Thanks!