Giulio Ermanno Pibiri

icon indicating a website link https://jermp.github.io icon indicating an email [email protected]

icon company Ca' Foscari University of Venice icon location Padova, Italy icon location Associate Professor of Computer Science. Focus on data structures, data compression, and code optimization.

Results 84 comments of Giulio Ermanno Pibiri

CI via Github Actions

An update on this front. I've now added a build.yml workflow. @Alessio-Campa has a docker file that allows one to use Fulgor without needing to install any dependency. He will...

memory allocation failed

I forgot to mention that I'm using `ggcat_cmdline 2.0.0`. (I retried the previous command with less threads and less memory but I got the same error.)

memory allocation failed

Oh, I now see that the process is taking far more memory than I expected: already 350G out of my 500G available. Is this normal? I thought the `-m` parameter...

memory allocation failed

Thank you Andrea!

memory allocation failed

Thank you Andrea. How should I build the project now that I'm on the `dev` branch? I tried `cargo build` and `cargo install --path crates/cmdline/ --locked` as described in the...

memory allocation failed

Ok, I managed to build it :) I needed to first `rustup update`.

memory allocation failed

Hi Andrea, on the entire Blackwell 661k, it failed again with the same error message: ``` started phase: maximal unitigs links building [step 3] memory allocation of 154618822656 bytes failed...

Non-informative messages if the used index is damaged (libc++abi: terminating due to uncaught exception of type std::length_error: vector)

Thanks Karel and Rob for your thoughts. Yes, I agree and will add something soon! Also ping: @Alessio-Campa.

Non-informative messages if the used index is damaged (libc++abi: terminating due to uncaught exception of type std::length_error: vector)

Hi everybody, I added a serialization number to the Fulgor index (this feature is currently in a branch of the codebase that will be merged in `main` soonish). I'll add...

Non-informative messages if the used index is damaged (libc++abi: terminating due to uncaught exception of type std::length_error: vector)

Here it is https://github.com/jermp/fulgor/commit/f85ff8f5c4cb379f8d6924e4150018c3505f5861. Will be merged into `main` then. Closing this for now.