jeremymchacon

Results 6 comments of jeremymchacon

Filter variants before merging multiple VCFs?

Hi @jjuhh , did you ever come to a conclusion about this? I am also wanting to do some filtering on the single-sample vcfs prior to merging, but it seems...

Filter variants before merging multiple VCFs?

Thanks for responding @jjuhh. I think my question is more mundane than yours; the problem I am having is that the population mode (merging the files) only takes snf files...

FASTQ files without move tables in the header cause a crash

I also received the same error using v2.1.0 on ONT fastq reads processed through fastplong, although if I supplied the raw fastqs it worked.

test run TRIMGALORE error

Same here, same versions. This is true if I try a test run (-profile test,apptainer) or a real run. Also doesn't matter if I run using nf-core pipelines ... or...

annotation_colors option in plotMarkerHeatmap?

Thanks for your fast response! That's what I thought should work, but it isn't for me. Note that plotScoreHeatmap accepts my annotation_colors without error, but plotMarkerHeatmap errors out (I tried...

annotation_colors option in plotMarkerHeatmap?

Thanks! I'm using version 2.8, so I made similar adjustments to that version, and now it is working! I appreciate your help! (Also, I didn't realize you can access internal...