jennymoon90

How to generate the gene.gr input for HiTC pca.hic function?

3

Hi, I am trying to use the pca.hic function to call A/B compartments. How may I generate the object of class GenomicRanges describing the genes position in hg19 (gene.gr in...

Feed .validPair file into GoTHiC?

2

Dear nservant, I used to run HICUP2GOTHIC to reform bam file in bowtie_results/bwt2/rawdata to bam.gothic file, and feed into GoTHiC. Recently I encountered a problem with a large database, where...