jenjou

Recent changes with CL terms in composite-metazoan.owl?

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Hello, The ENCODE Project has been using the composite-metazoan.owl files provided with each UBERON release. While investigating some unexpected changes we saw on our end while updating to the latest...

This request is for multiple cell lines from Wicell that are a part of this collection: https://www.wicell.org/home/stem-cells/catalog-of-stem-cell-lines/collections/nhlbi-next-gen-rader.cmsx ## Preferred term label PENN093i-16-7 ## Synonyms Penn093i-16-7; iPS-16-1174-SeV7 ## Textual definition An...

## Preferred term label HCASMC-hTERT ## Synonyms n/a ## Textual definition An immortalized human coronary artery smooth muscle cell derived cell line. Described in this publication: https://www.ahajournals.org/doi/10.1161/CIRCRESAHA.122.321692 "To overcome the...

Term name: HCASMC-hTERT Potential parent term: http://purl.obolibrary.org/obo/CLO_0000078 Literature reference: https://www.ahajournals.org/doi/10.1161/CIRCRESAHA.122.321692

NTR: single-nucleus methylcytosine and transcriptome sequencing assay

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Preferred Term: single-nucleus methylcytosine and transcriptome sequencing assay Synonyms: snmCT-seq Definition: A multiomic method to measure the cytosine DNA methylation and gene expression signature of single cells. Relevant info: https://www.biorxiv.org/content/10.1101/434845v1...

NTR for CRISPR screen assays

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This issue covers 3 different types of CRISPR screens. Related publications: * https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8443183/ * https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5181115/ * https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6886585/ * https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5490986/ **Preferred Term:** CRISPR perturbation screen **Definition:** An assay in which cells...

NTR: long-read RNA sequencing assay

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Preferred Term: long-read RNA sequencing assay Synonyms: long-read RNA-seq Definition: An assay that determines the sequence of an RNA molecule using single-molecule technologies to allow longer read lengths. Relevant info:...

NTR: Illumina NovaSeq X and Illumina NovaSeq X Plus

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This new term request is for two Illumina sequencers. A specification sheet from Illumina for both sequencers is available at: https://www.illumina.com/content/dam/illumina/gcs/assembled-assets/marketing-literature/novaseq-x-series-spec-sheet-m-us-00197/novaseq-x-series-specification-sheet-m-us-00197.pdf ## Preferred term label Illumina NovaSeq X ## Synonyms...

Request: add synonym for ONT GridION X5

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ONT GridION X5 (EFO:0008633) appears to be mentioned in vendor materials under a slightly different name, potentially due to the company renaming the device at some point. For example: *...

New term request: HUDEP-2

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For new term requests, please provide the following information: ## Preferred term label HUDEP-2 ## Synonyms HUDEP2; Human Umbilical cord blood-Derived Erythroid Progenitor-2 ## Textual definition An immortalized human erythroid...