Jacob Munro comments

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Jacob Munro

terminate called after throwing an instance of 'std::runtime_error'

Thanks for the suggestion. I've tried the following: 1. latest dev 2. latest dev + `--force model_lh_impr` 3. latest dev + `--force model_lh_impr --precision 12 --blmin 0.000000001` However, the issue...

terminate called after throwing an instance of 'std::runtime_error'

Just an update, the issue seems to be limited to the `+ASC_STAM` model parameter. The same input with either `+ASC_LEWIS` or no ascertainment bias correction has no issue.

terminate called after throwing an instance of 'std::runtime_error'

Sure, here is a trimmed down version of the original that gives the same error: https://drive.google.com/open?id=1_QWid_PSvbkkDucibHVVOHbmDdcjBNhd

terminate called after throwing an instance of 'std::runtime_error'

I wasn't aware of that. Can you briefly outline what the advantage of using the full MSA is over using ascertainment bias correction? Would a similar result be achieved by...

lumpy_filter slower with 2 threads than 1

Hi Brent, Yes I verified by running the command outside of smoove. I does look like it might be related to disk speed though, I tried copying the bams to...

Get rid of file name rolling for reports, trace, dag and timeline generation

Would it be possible to create a copy/symlink that points to the most recent log/trace? For the purpose of debugging it's nice to be able to quickly check the latest...