jellyvanderwoude

dyld: Symbol not found: __ZNKSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEE13find_first_ofEPKcm - Failed to read from standard input: unknown file type

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My code and printed output: > (base) bio-24046:~ jvanderwoude3$ snippy --outdir trial --ref PAO1.gbk --R1 CF1_LeftLower_D12_R1.fastq.gz --R2 CF1_LeftLower_D12_R2.fastq.gz > [12:13:56] This is snippy 4.6.0 > [12:13:56] Written by Torsten Seemann...

Can't locate Bio/Roary/CommandLine/Roary.pm in @INC (you may need to install the Bio::Roary::CommandLine::Roary module)

10

I'm running bactopia --wf pangenome --use_roary on Conda and running into the following problem: > (bactopia) bio-24046:bactopia-folder jvanderwoude3$ bactopia --wf pangenome --bactopia /Volumes/JellyExternal/bactopia-folder --include include130.txt --use_roary > Traceback (most recent...

Here's the code I'm running: **hogwash(pheno = AK, geno = genotype3, tree = phytree, tree_type = "phylogram", file_name = "gene_presence_absence_hogwash", dir = "~", perm = 10000, fdr = 0.15, bootstrap...