Jeffrey Godwin

icon indicating a website link https://www.linkedin.com/in/jeffgodwin1/

icon company IFOM-ETS icon location Milan, Italy icon location Looks at sequencing data for a living. Bioinformatics Beginner.

Results 5 issues of Jeffrey Godwin

Possible introduction of bias from reference from genome

Hi Alonge, Thanks for this wonderful tool. We used ragtag correction for scaffolding our draft genome (plant) with a published genome of the same species, albeit from a different population....

Issue loading hic file

Hey guys, So I'm fairly new to this. I have a S. cerevisiae hic file generated through the the HiCUP pipeline. However, I'm not able to view this particular file...

Restriction with Arima kit

10 comment

Dear team, I would like to clarify if the --renz parameter in tadbit map supports the restriction site for the ARIMA kit (https://arimagenomics.com/products/genome-wide-hic/) - ^GATC,G^ANTC. If so, what is the...

[Question] Mad-max filter

Hello, I have a question regarding the filtering of low count bins. The nextflow (v2.1.0) results produces balanced cooler files. Am I correct to assume this is from the "cooler...

Bismark-mapper error

3 comment

Hi team, I have set up methystar on my system. Thanks for the simple and seamless process. While running the pipeline, there's an issue in the Bismark mapping step. The...