Jean-Baka Domelevo Entfellner

Well, mea culpa, I was wrong in what I said above, quoting **is** necessary, but we should modify the manpage so that it tells users that the vertical pipe has...

Ok, I reply to myself **again**, very sorry for all this noise: I see the "\\\\|" appears correctly in the source .Rd file, but for some reason, on of the...

Hi Fred, hi Romain, But usually one wants to *retain* sites that are rather well conserved, not filter them out. There is a whole body of literature about alignment trimmers,...

Hi everyone, section 2.3 actually gives much information, but perhaps it doesn't put enough emphasis on the fact that the copy-on-replace behaviour is tightly linked to the number of references...

Yes, thank you Hadley, I had read that, but perhaps the OP didn't... ;) Still, IMHO there is something to explain about that number of references seemingly equal to 2^16...