jdwinkler-lanzatech
jdwinkler-lanzatech
Hi, I've been digging into why --outseq has been generating empty sequence files despite there being results in the Barrnap generated GFF files. It looks like Bedtools is rejecting some...
Hi, Thank you for your hard work on eggNOG, it is an excellent functional annotation tool! I wanted to ask a question that may be particular to how I am...
Hi, Thanks for your work on GTDBTk. I'm currently trying to process a bunch of assemblies from different sources (binning tools, public repositories) that use different file extensions, so the...
Hi, I am dereplicating about 5,000 MAGs using dRep 3.3.0 with the new default FastANI genome comparison algorithm. dRep initially estimated a pairwise alignment phase of about 160 minutes, but...
Hi, I was wondering if it would be possible to provide a filtering option based on assembly (species/assigned) name? I often want to pull a group of microbes with a...
Hi again! I noticed while doing some testing of gapseq that it seems to run tblastn iteratively over the reference set. Would it be possible to change it so your...
Hi, Thank you for your work on Minmap2 and many other tools! I am interested in using minimap2 as part of a pipeline that involves aligning divergent (ANI 75% or...
Hi, Thanks for your work on SibeliaZ, it looks quite interesting as a potential component for an alignment pipeline I am building. I do have a question though; I am...
Hi, I'm interested in aligning microbial assemblies/closed genomes using MashMap. I am unsure of the difference between the various filtering options after trying to compare a few genomes. Do you...
Hi, I am trying out StrainFLAIR at the moment, and noticed a huge, repeating stream of errors during the graph construction phase: Stack trace path: /tmp/vg_crash_1XXwg5/stacktrace.txt Please include the stack...