jdwinkler-lanzatech

Yeah, that'll probably put a damper on my analysis then. Thanks for the head's up!

Nothing fancy, it's basically just a fasta file as follows: ``` >locus tag 1 ATG... ... TAG ``` I'm not sure what information inStrain is extracting from the prodigal-do you...

Okay, I can whip that up easily enough!

Unfortunately I get the same coverage KeyError described in #56. I'll see if I can figure out why.

That gives me an idea, maybe I'm outputting the coordinates incorrectly. I'll check that and get back to you!

No worries! Let me see if I can reproduce a minimal example and send you more details early next week.

The conda distribution also works for me.

Thanks. I'll give it a shot when I'm back from holiday next week. Just FYI, the H2O exchange reaction in Gapseq is "R_EX_cpd00001_e0" in the models, so could be a...

The new version of reframed seems to work, thanks! I mostly get N/A for MIP predictions, but I'll play around with it more.