JD Russo

Monte Carlo CI bootstrapping estimator returning array of None

4

I'm not particularly familiar with this part of the code, so please let me know what would be helpful in putting together a minimal working example to demonstrate this bug...

**Is your feature request related to a problem? Please describe.** If you launch a new WESTPA run from inside an existing run (i.e. in a plugin's `finalize_run()` hook) with `westpa.cli.core.w_run.run()`,...

Notebook launched with w_jupyter throws pickling error when calling w_main()

3

When launching a Jupyter notebook for analysis with `w_jupyter` using a Python 3 kernel, the following cell ``` %matplotlib inline from matplotlib import pyplot as plt import numpy as np...

Allowing weights for VAMP dimensionality reduction

6

**Is your feature request related to a problem? Please describe.** The `TICA` and `VAMP` decomposition classes both provide similar interfaces for `.fit_from_timeseries(data)`. However, the `TICA` class allows a `weights` argument....

I have deployed webprotege using [webprotege-deploy](https://github.com/protegeproject/webprotege-deploy). Almost everything seems to be working -- I can log in, upload an ontology, modify it, etc. However, trying to download the ontology with...