Jenny Drnevich

UPDATE: On @rob-p 's suggestion, I removed the `--recoverOrphans` option and then all 60 samples did finished without segfaulting. Perhaps there were too many orphans to handle - alignments rates...

I don't know, @Sophia409 - that's a question for @ctrapnell or @brgew to see if they ever fixed the bug. In my case, I just slightly increased my cell filtering...

I third this request for easy ways to rotate/flip images so my brain slices are all in the same orientation.