John Didion

Thanks for the response! The use case I was thinking of is that sometimes I want to run jobs on the cluster and sometimes I want to run them on...

Sure, I think that workflow will definitely appeal to some users. For me, i’m more interested in having a single interface to execute jobs, whether they be local or remote,...

I’ve thought through this some more, and I think I have a good plan. The model I am working with is that there will be two separate JIP databases, one...

I’ve scaled this back a bit. I decided mucking up the database with lots of pointers to jobs running on remote hosts was probably not worth the cost. Instead I’m...

Hi Thasso, I am writing a pipeline where the first step is parallel alignment of multiple sets of fastq files and the second step will be to merge the resulting...

I think this is easily solvable by using recordtype as a drop-in replacement for namedtuple: https://pypi.python.org/pypi/recordtype

VCF-VCF comparison, to determine concordance (given two orthogonal VCFs) or sens/spec (given a truth set).

Note that this Dockerfile builds fine on linux, so it is a MacOS (and perhaps an M1) issue.

Thanks for making progress on this!

(1) is possible by adding a `docker_image` input parameter to your task with a default value, e.g. ``` task foo { input { String docker_image = "myimage" } ... runtime...