mudskipper
mudskipper copied to clipboard
Published
20 hours ago •
OceanGenomics
OceanGenomics
Compile errors
MacBook M1 Max Pro
Dockerfile:
FROM ubuntu:focal as build
ARG MUDSKIPPER_VERSION
ENV DEBIAN_FRONTEND=noninteractive
ENV PATH=/root/.cargo/bin:$PATH
ADD https://github.com/OceanGenomics/mudskipper/archive/refs/tags/v${MUDSKIPPER_VERSION}.tar.gz mudskipper.tgz
RUN apt update \
&& apt install -y curl build-essential cmake \
&& curl --proto '=https' --tlsv1.2 -sSf https://sh.rustup.rs | sh -s -- -y \
&& mkdir mudskipper \
&& tar -C mudskipper --strip-components=1 -xzf mudskipper.tgz \
&& cd mudskipper \
&& cargo build --release \
&& mv target/release/mudskipper /usr/local/bin
FROM ubuntu:focal
COPY --from=build /usr/local/bin/mudskipper /usr/local/bin/mudskipper
Docker command: docker build -f Dockerfile.mudskipper -t mudskipper --build-arg MUDSKIPPER_VERSION=0.1.0 .
Errors:
#0 131.0 error[E0308]: mismatched types
#0 131.0 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:152:16
#0 131.0 |
#0 131.0 152 | s: sam_copy.as_ptr() as *mut i8,
#0 131.0 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.0 |
#0 131.0 = note: expected raw pointer `*mut u8`
#0 131.0 found raw pointer `*mut i8`
#0 131.0
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:583:17
#0 131.1 |
#0 131.1 583 | c_str.as_ptr() as *mut i8,
#0 131.1 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*mut i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:678:49
#0 131.1 |
#0 131.1 678 | let c_str = ffi::CStr::from_ptr(aux.offset(TYPE_ID_LEN).cast::<i8>());
#0 131.1 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*const i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:798:21
#0 131.1 |
#0 131.1 798 | ctag,
#0 131.1 | ^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*mut i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:799:21
#0 131.1 |
#0 131.1 799 | b'A' as i8,
#0 131.1 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.1 |
#0 131.1 799 | (b'A' as i8).try_into().unwrap(),
#0 131.1 | + +++++++++++++++++++++
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:805:21
#0 131.1 |
#0 131.1 805 | ctag,
#0 131.1 | ^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*mut i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:806:21
#0 131.1 |
#0 131.1 806 | b'c' as i8,
#0 131.1 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.1 |
#0 131.1 806 | (b'c' as i8).try_into().unwrap(),
#0 131.1 | + +++++++++++++++++++++
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:812:21
#0 131.1 |
#0 131.1 812 | ctag,
#0 131.1 | ^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*mut i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:813:21
#0 131.1 |
#0 131.1 813 | b'C' as i8,
#0 131.1 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.1 |
#0 131.1 813 | (b'C' as i8).try_into().unwrap(),
#0 131.1 | + +++++++++++++++++++++
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:819:21
#0 131.1 |
#0 131.1 819 | ctag,
#0 131.1 | ^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*mut i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:820:21
#0 131.1 |
#0 131.1 820 | b's' as i8,
#0 131.1 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.1 |
#0 131.1 820 | (b's' as i8).try_into().unwrap(),
#0 131.1 | + +++++++++++++++++++++
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:826:21
#0 131.1 |
#0 131.1 826 | ctag,
#0 131.1 | ^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*mut i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:827:21
#0 131.1 |
#0 131.1 827 | b'S' as i8,
#0 131.1 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.1 |
#0 131.1 827 | (b'S' as i8).try_into().unwrap(),
#0 131.1 | + +++++++++++++++++++++
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:833:21
#0 131.1 |
#0 131.1 833 | ctag,
#0 131.1 | ^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 = note: expected raw pointer `*const u8`
#0 131.1 found raw pointer `*mut i8`
#0 131.1
#0 131.1 error[E0308]: mismatched types
#0 131.1 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:834:21
#0 131.1 |
#0 131.1 834 | b'i' as i8,
#0 131.1 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.1 |
#0 131.1 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.1 |
#0 131.1 834 | (b'i' as i8).try_into().unwrap(),
#0 131.1 | + +++++++++++++++++++++
#0 131.1
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:840:21
#0 131.2 |
#0 131.2 840 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:841:21
#0 131.2 |
#0 131.2 841 | b'I' as i8,
#0 131.2 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.2 |
#0 131.2 841 | (b'I' as i8).try_into().unwrap(),
#0 131.2 | + +++++++++++++++++++++
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:847:21
#0 131.2 |
#0 131.2 847 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:848:21
#0 131.2 |
#0 131.2 848 | b'f' as i8,
#0 131.2 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.2 |
#0 131.2 848 | (b'f' as i8).try_into().unwrap(),
#0 131.2 | + +++++++++++++++++++++
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:855:21
#0 131.2 |
#0 131.2 855 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:856:21
#0 131.2 |
#0 131.2 856 | b'd' as i8,
#0 131.2 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.2 |
#0 131.2 856 | (b'd' as i8).try_into().unwrap(),
#0 131.2 | + +++++++++++++++++++++
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:864:25
#0 131.2 |
#0 131.2 864 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:865:25
#0 131.2 |
#0 131.2 865 | b'Z' as i8,
#0 131.2 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.2 |
#0 131.2 865 | (b'Z' as i8).try_into().unwrap(),
#0 131.2 | + +++++++++++++++++++++
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:874:25
#0 131.2 |
#0 131.2 874 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:875:25
#0 131.2 |
#0 131.2 875 | b'H' as i8,
#0 131.2 | ^^^^^^^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 help: you can convert an `i8` to a `u8` and panic if the converted value doesn't fit
#0 131.2 |
#0 131.2 875 | (b'H' as i8).try_into().unwrap(),
#0 131.2 | + +++++++++++++++++++++
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:884:25
#0 131.2 |
#0 131.2 884 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:891:25
#0 131.2 |
#0 131.2 891 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.2 error[E0308]: mismatched types
#0 131.2 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:900:25
#0 131.2 |
#0 131.2 900 | ctag,
#0 131.2 | ^^^^ expected `u8`, found `i8`
#0 131.2 |
#0 131.2 = note: expected raw pointer `*const u8`
#0 131.2 found raw pointer `*mut i8`
#0 131.2
#0 131.3 error[E0308]: mismatched types
#0 131.3 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:907:25
#0 131.3 |
#0 131.3 907 | ctag,
#0 131.3 | ^^^^ expected `u8`, found `i8`
#0 131.3 |
#0 131.3 = note: expected raw pointer `*const u8`
#0 131.3 found raw pointer `*mut i8`
#0 131.3
#0 131.3 error[E0308]: mismatched types
#0 131.3 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:916:25
#0 131.3 |
#0 131.3 916 | ctag,
#0 131.3 | ^^^^ expected `u8`, found `i8`
#0 131.3 |
#0 131.3 = note: expected raw pointer `*const u8`
#0 131.3 found raw pointer `*mut i8`
#0 131.3
#0 131.3 error[E0308]: mismatched types
#0 131.3 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:923:25
#0 131.3 |
#0 131.3 923 | ctag,
#0 131.3 | ^^^^ expected `u8`, found `i8`
#0 131.3 |
#0 131.3 = note: expected raw pointer `*const u8`
#0 131.3 found raw pointer `*mut i8`
#0 131.3
#0 131.3 error[E0308]: mismatched types
#0 131.3 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:932:25
#0 131.3 |
#0 131.3 932 | ctag,
#0 131.3 | ^^^^ expected `u8`, found `i8`
#0 131.3 |
#0 131.3 = note: expected raw pointer `*const u8`
#0 131.3 found raw pointer `*mut i8`
#0 131.3
#0 131.3 error[E0308]: mismatched types
#0 131.3 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:939:25
#0 131.3 |
#0 131.3 939 | ctag,
#0 131.3 | ^^^^ expected `u8`, found `i8`
#0 131.3 |
#0 131.3 = note: expected raw pointer `*const u8`
#0 131.3 found raw pointer `*mut i8`
#0 131.3
#0 131.3 error[E0308]: mismatched types
#0 131.3 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:948:25
#0 131.3 |
#0 131.3 948 | ctag,
#0 131.3 | ^^^^ expected `u8`, found `i8`
#0 131.3 |
#0 131.3 = note: expected raw pointer `*const u8`
#0 131.3 found raw pointer `*mut i8`
#0 131.3
#0 131.3 error[E0308]: mismatched types
#0 131.3 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:955:25
#0 131.3 |
#0 131.3 955 | ctag,
#0 131.3 | ^^^^ expected `u8`, found `i8`
#0 131.3 |
#0 131.3 = note: expected raw pointer `*const u8`
#0 131.3 found raw pointer `*mut i8`
#0 131.3
#0 131.4 error[E0308]: mismatched types
#0 131.4 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:964:25
#0 131.4 |
#0 131.4 964 | ctag,
#0 131.4 | ^^^^ expected `u8`, found `i8`
#0 131.4 |
#0 131.4 = note: expected raw pointer `*const u8`
#0 131.4 found raw pointer `*mut i8`
#0 131.4
#0 131.4 error[E0308]: mismatched types
#0 131.4 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:971:25
#0 131.4 |
#0 131.4 971 | ctag,
#0 131.4 | ^^^^ expected `u8`, found `i8`
#0 131.4 |
#0 131.4 = note: expected raw pointer `*const u8`
#0 131.4 found raw pointer `*mut i8`
#0 131.4
#0 131.4 error[E0308]: mismatched types
#0 131.4 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:980:25
#0 131.4 |
#0 131.4 980 | ctag,
#0 131.4 | ^^^^ expected `u8`, found `i8`
#0 131.4 |
#0 131.4 = note: expected raw pointer `*const u8`
#0 131.4 found raw pointer `*mut i8`
#0 131.4
#0 131.4 error[E0308]: mismatched types
#0 131.4 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:987:25
#0 131.4 |
#0 131.4 987 | ctag,
#0 131.4 | ^^^^ expected `u8`, found `i8`
#0 131.4 |
#0 131.4 = note: expected raw pointer `*const u8`
#0 131.4 found raw pointer `*mut i8`
#0 131.4
#0 131.4 error[E0308]: mismatched types
#0 131.4 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/record.rs:1009:17
#0 131.4 |
#0 131.4 1009 | c_str.as_ptr() as *mut i8,
#0 131.4 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.4 |
#0 131.4 = note: expected raw pointer `*const u8`
#0 131.4 found raw pointer `*mut i8`
#0 131.4
#0 131.5 error[E0308]: mismatched types
#0 131.5 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/mod.rs:268:55
#0 131.5 |
#0 131.5 268 | let _ = htslib::sam_hdr_line_name(header, b"SQ".as_ptr().cast::<i8>(), 0);
#0 131.5 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.5 |
#0 131.5 = note: expected raw pointer `*const u8`
#0 131.5 found raw pointer `*const i8`
#0 131.5
#0 131.5 Compiling bio v0.41.0
#0 131.5 error[E0308]: mismatched types
#0 131.5 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/mod.rs:943:17
#0 131.5 |
#0 131.5 943 | text as *const i8,
#0 131.5 | ^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.5 |
#0 131.5 = note: expected raw pointer `*const u8`
#0 131.5 found raw pointer `*const i8`
#0 131.5
#0 131.5 error[E0308]: mismatched types
#0 131.5 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/mod.rs:946:27
#0 131.5 |
#0 131.5 946 | (*rec).text = text as *mut i8;
#0 131.5 | ----------- ^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.5 | |
#0 131.5 | expected due to the type of this binding
#0 131.5 |
#0 131.5 = note: expected raw pointer `*mut u8`
#0 131.5 found raw pointer `*mut i8`
#0 131.5
#0 131.5 error[E0308]: mismatched types
#0 131.5 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/mod.rs:1212:66
#0 131.5 |
#0 131.5 1212 | let rec = htslib::sam_hdr_parse((l_text + 1) as u64, text as *const i8);
#0 131.5 | ^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.5 |
#0 131.5 = note: expected raw pointer `*const u8`
#0 131.5 found raw pointer `*const i8`
#0 131.5
#0 131.6 error[E0308]: mismatched types
#0 131.6 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bam/mod.rs:1213:27
#0 131.6 |
#0 131.6 1213 | (*rec).text = text as *mut i8;
#0 131.6 | ----------- ^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.6 | |
#0 131.6 | expected due to the type of this binding
#0 131.6 |
#0 131.6 = note: expected raw pointer `*mut u8`
#0 131.6 found raw pointer `*mut i8`
#0 131.6
#0 131.6 error[E0308]: mismatched types
#0 131.6 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/header.rs:118:17
#0 131.6 |
#0 131.6 118 | name_pointers.as_ptr() as *const *mut i8,
#0 131.6 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.6 |
#0 131.6 = note: expected raw pointer `*const *mut u8`
#0 131.6 found raw pointer `*const *mut i8`
#0 131.6
#0 131.6 error[E0308]: mismatched types
#0 131.6 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/header.rs:341:17
#0 131.6 |
#0 131.6 341 | c_str.as_ptr() as *mut i8,
#0 131.6 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.6 |
#0 131.6 = note: expected raw pointer `*const u8`
#0 131.6 found raw pointer `*mut i8`
#0 131.6
#0 131.6 error[E0308]: mismatched types
#0 131.6 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/header.rs:366:17
#0 131.6 |
#0 131.6 366 | c_str_tag.as_ptr() as *mut i8,
#0 131.6 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.6 |
#0 131.6 = note: expected raw pointer `*const u8`
#0 131.6 found raw pointer `*mut i8`
#0 131.6
#0 131.6 error[E0308]: mismatched types
#0 131.6 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/header.rs:403:17
#0 131.6 |
#0 131.6 403 | c_str.as_ptr() as *const i8,
#0 131.6 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.6 |
#0 131.6 = note: expected raw pointer `*const u8`
#0 131.6 found raw pointer `*const i8`
#0 131.6
#0 131.7 error[E0308]: mismatched types
#0 131.7 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/header.rs:431:17
#0 131.7 |
#0 131.7 431 | c_str.as_ptr() as *const i8,
#0 131.7 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.7 |
#0 131.7 = note: expected raw pointer `*const u8`
#0 131.7 found raw pointer `*const i8`
#0 131.7
#0 131.7 error[E0308]: mismatched types
#0 131.7 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:319:68
#0 131.7 |
#0 131.7 319 | htslib::bcf_update_id(self.header().inner, self.inner, c_str.as_ptr() as *mut i8)
#0 131.7 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.7 |
#0 131.7 = note: expected raw pointer `*const u8`
#0 131.7 found raw pointer `*mut i8`
#0 131.7
#0 131.7 error[E0308]: mismatched types
#0 131.7 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:332:68
#0 131.7 |
#0 131.7 332 | htslib::bcf_update_id(self.header().inner, self.inner, c_str.as_ptr() as *mut i8)
#0 131.7 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.7 |
#0 131.7 = note: expected raw pointer `*const u8`
#0 131.7 found raw pointer `*mut i8`
#0 131.7
#0 131.7 error[E0308]: mismatched types
#0 131.7 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:344:73
#0 131.7 |
#0 131.7 344 | if unsafe { htslib::bcf_add_id(self.header().inner, self.inner, c_str.as_ptr() as *mut i8) }
#0 131.7 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.7 |
#0 131.7 = note: expected raw pointer `*const u8`
#0 131.7 found raw pointer `*mut i8`
#0 131.7
#0 131.7 error[E0308]: mismatched types
#0 131.7 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:591:17
#0 131.7 |
#0 131.7 591 | ptrs.as_mut_ptr(),
#0 131.7 | ^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.7 |
#0 131.7 = note: expected raw pointer `*mut *const u8`
#0 131.7 found raw pointer `*mut *const i8`
#0 131.7
#0 131.8 error[E0308]: mismatched types
#0 131.8 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:825:17
#0 131.8 |
#0 131.8 825 | tag_c_str.as_ptr() as *mut i8,
#0 131.8 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.8 |
#0 131.8 = note: expected raw pointer `*const u8`
#0 131.8 found raw pointer `*mut i8`
#0 131.8
#0 131.8 error[E0308]: mismatched types
#0 131.8 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:872:17
#0 131.8 |
#0 131.8 872 | tag_c_str.as_ptr() as *mut i8,
#0 131.8 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.8 |
#0 131.8 = note: expected raw pointer `*const u8`
#0 131.8 found raw pointer `*mut i8`
#0 131.8
#0 131.8 error[E0308]: mismatched types
#0 131.8 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:873:17
#0 131.8 |
#0 131.8 873 | c_ptrs.as_slice().as_ptr() as *mut *const i8,
#0 131.8 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.8 |
#0 131.8 = note: expected raw pointer `*mut *const u8`
#0 131.8 found raw pointer `*mut *const i8`
#0 131.8
#0 131.9 error[E0308]: mismatched types
#0 131.9 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:918:17
#0 131.9 |
#0 131.9 918 | tag_c_str.as_ptr() as *mut i8,
#0 131.9 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.9 |
#0 131.9 = note: expected raw pointer `*const u8`
#0 131.9 found raw pointer `*mut i8`
#0 131.9
#0 131.9 error[E0308]: mismatched types
#0 131.9 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:973:17
#0 131.9 |
#0 131.9 973 | tag_c_str.as_ptr() as *mut i8,
#0 131.9 | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.9 |
#0 131.9 = note: expected raw pointer `*const u8`
#0 131.9 found raw pointer `*mut i8`
#0 131.9
#0 131.9 error[E0308]: mismatched types
#0 131.9 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:1234:17
#0 131.9 |
#0 131.9 1234 | c_str.as_ptr() as *mut i8,
#0 131.9 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.9 |
#0 131.9 = note: expected raw pointer `*const u8`
#0 131.9 found raw pointer `*mut i8`
#0 131.9
#0 131.9 error[E0308]: mismatched types
#0 131.9 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:1349:17
#0 131.9 |
#0 131.9 1349 | c_str.as_ptr() as *mut i8,
#0 131.9 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 131.9 |
#0 131.9 = note: expected raw pointer `*const u8`
#0 131.9 found raw pointer `*mut i8`
#0 131.9
#0 132.0 error[E0308]: mismatched types
#0 132.0 --> /root/.cargo/registry/src/github.com-1ecc6299db9ec823/rust-htslib-0.38.2/src/bcf/record.rs:1385:17
#0 132.0 |
#0 132.0 1385 | c_str.as_ptr() as *mut i8,
#0 132.0 | ^^^^^^^^^^^^^^^^^^^^^^^^^ expected `u8`, found `i8`
#0 132.0 |
#0 132.0 = note: expected raw pointer `*const u8`
#0 132.0 found raw pointer `*mut i8`
#0 132.0
#0 132.1 For more information about this error, try `rustc --explain E0308`.
#0 132.1 error: could not compile `rust-htslib` due to 62 previous errors
#0 132.1 warning: build failed, waiting for other jobs to finish...
#0 137.5 error: build failed
