Jim

icon company University of Michigan icon location Ann Arbor icon location Machine learning, Omics, and Cancer research, because why not?

Results 4 comments of Jim

Add Singularity arguments for specific rules in Snakefile

Work on being able to use singularities with CUDA would be greatly appreciated.

Custom config being ignored

I am struggling with the same problem.

Custom config being ignored

Actually, I seemed to just have solved it. I think nextflow is ignoring config parameters in case these are formatted incorrectly. Try quoting your strings ``` process { withName: 'NFCORE_RNASEQ:RNASEQ:ALIGN_STAR'...

Custom config being ignored

Actually, you probably also have to separate the properties of the two processes. ``` process { withName: 'NFCORE_RNASEQ:RNASEQ:ALIGN_STAR' { // single job memory = '80.GB' cpus = 32 time =...