John Blischak

@cderv Thanks for diving into this complicated issue and following up. Ultimately I think this is a documentation issue. Some arguments to `html_document()`, e.g. `keep_md`, are not inherited like the...

@marcelotrevisani Thanks for your work on this. I look forward to the revamped CRAN skeleton. I wanted to highlight an Issue with the current version of the skeleton. It can't...

> There is room for improvement here imo, as if I have 100 small jobs all with the same resource needs, I'd prefer group to just concatenate them, and still...

Update: PR #1218 from @pvandyken was merged into main in commit a8014d030a2a3ea04743e30bcf5164801291378f and released in version 7.11.0 (#1783)

I just tested job grouping with Snakemake 7.11. Unfortunately, at least for my [intended use case](https://github.com/jdblischak/smk-simple-slurm/tree/main/examples/job-grouping), it still summed the `mem_mb` and `threads` for each of the rules in the...

> did you specify the maximum number of threads using --cores or -c? @pvandyken Thanks for the tip. I missed that new detail. I tried out using `--cores` and `--resources...

Related to this issue, if the path does not exist, `path_real()` inserts the value of the current working directory: ``` r packageVersion("fs") #> [1] '1.3.1.9000' fs::path_real("C:/Users/") #> C:/Users fs::path_real("C:/Users/non-existent") #>...

I confirmed that my original issue is now fixed by installing crul 1.2 and the dev version of rcrossref. Please let me know if there is any additional testing I...

Also, the 1.99.2 release has the version listed as 1.99.1 in the DESCRIPTION file, so R has no way to distinguish which of the releases was installed: https://github.com/hms-dbmi/scde/blob/1.99.2/DESCRIPTION#L4

I'm running into the same problem and can't find a solution. Here's what I've tried: When I initially ran `conda smithy register-ci`, I had my Azure token in `~/.conda-smithy/azure.token` and...