jcyang

Results 7 comments of jcyang

memory leak for single-cell resolution spatial edgelist construction

Improved implementation #39

Error in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double)

Hi, This is a bug related to the version of Seurat. The recent version on the master branch should fix this.

Function RunNICHES does not work for one-cell case

I tried to reproduce this with a simulation example using Seurat V4 and V5. Seurat V4 works fine in RunNICHES even with just one cell in one of the cell...

Function RunNICHES does not work for one-cell case

feel free to reopen the issue if there are additional questions

bug fix for existing issues

bug fix to #34 and #18 : The codes are rewritten to prevent issues related rownames inconsistency in Seurat::AddMetaData()

bug fix for existing issues

fix to #38 and updated documentation

Local microenvironment specificity

By default it would be a few spots away (i.e., the interactions between the center spot and the nearby spots). There are two options to account for the spatial distance,...