jcleple33

"segmentation error" running reconstruct_contig.py - version 6.1.0

8

Hi Liz, For about 60 clusters I have an error running reconstruct_contig.py: example error report: $ cat slurm-19441671.out 2.17-r941 /var/spool/slurm/d/job19441671/slurm_script : ligne 10 : 19632 Erreur de segmentation reconstruct_contig.py --nx_cycle_detection...

execution error with reconstruct_contig.py FileNotFoundError: [Errno 2] No such file or directory

4

Running cogent 6.0.0 / reconstruct_contig.py I got such error on several cluster for which reconstruction failed using kmer 30, 60 and 80: un example below: jleple@genologin1 /work/jleple/PACBIOII/E656_SMRTCell_A/COGENT_A $ cat slurm-19002922_10.out...

reconstruct gene longer in 3 prime than associated isoforms

3

Hi! Running Cogent on isoseq3 data, after collapsing and filtering for 5' degraded isoform and reconstruction I have aligned the reconstructed gene and the different hq_isoforms. I do not understand...