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"cget install" fails for items accessible to wget; proxy consideration

3

Is there anything that can be edited, or set to allow cget to function with proxy defined? Context: python-3.8.1, attempts to install SAIGE (https://github.com/weizhouUMICH/SAIGE) fail because cget can't find a...

Greetings. Under Centos 6.9, using cmake-3.13.2, gcc 7.3 and 1.68.0, the salmon-1.30 build fails at the make step. The command make -j8 fails with: ``` [100%] Linking CXX executable salmon...

SAIGE installs fail because statgen/savvy can't be accessed (Centos 6.x)

1

They fail the same way: Downloading https://github.com/statgen/savvy/archive/.tar.gz "Download failed with error 400" At the core, this command fails: cget install statgen/savvy@ Did you make some change which broke downstream installs...

Running RUFUS on a file system shared across machines

1

Is there a way to run RUFUS (runTest.sh, clean.sh, plus anything else a standard user would do) with directed output? In this scenario, RUFUS lives on an NFS share. But...

Greetings. All pip install attempts from your "2.2.tar.gz" fail. Error "SyntaxError: Missing parentheses in call to 'print'. Did you mean print(version)?" Do you have any leads? Environment is Centos 7.6....

lumpy_filter missing / never built

2

Greetings. I tried to install lumpy-sv v0.2.13 (for smoove-0.2.3). All dependencies are met, except one. When calling smoove, I see "lumpy_filter" is missing. The build instructions here make no direct...