Jordan Bisanz

I think I have run in to this similar issue wherein 10 samples out of 53 got hung up at this step with 3.12.0. Samples were prefiltered for quality, adapters,...

Is it actually all zeros, or is that just the first set of values shown in that preview? You should probably check the sum, rowSums, and colSums of your table.

Hi Nick, This is certainly in my to do list but I have been occupied with those pesky wet lab experiments. I will reply again when it has been done....

I started the process and then it fell off my radar. I will have some spare time next week to hopefully get this submitted. @antagomir @colinbrislawn any preference for cran/bioconductor?

Perhaps it is an artifact format that isn't supported yet. What are you specifically trying to import?

That should be a straight forward addition, i'll add them in the next couple days.

@mestaki That sounds like a great idea. Could you test this and do a pull request? You would add phytools to DESCRIPTION, add in the import of read.newick to NAMESPACE...

Could you post your session info? You could also try installing from source: ``` #see here for more info https://forum.qiime2.org/t/problems-installing-qiime2r/11999/6 download.file("https://github.com/jbisanz/qiime2R/archive/master.zip", "source.zip") unzip("source.zip") install.packages("qiime2R-master", repos = NULL, type="source") ```

Yes, when in doubt, manually install the dependencies. Not sure why you would have this problem, could be something about where they are being installed on windows.

Interesting, this wouldn't be coming from qiime2R per se, but rather from the `read.tree` function of the package ape. It looks like this ?bug? was fixed in ape so I...