Pushkala Jayaraman

monitor_process fails to kill process halfway

1

Hello @yunfeiguo I'm trying to replicate the generation of fastqs using varsim_multi.py and i keep getting stuck towards the end: here is the command i used: `python /Public/varsim/master/varsim/varsim_multi.py --regions /DGD/Research/ConsPanel_RD/SIM/CONS.bed...

Weird coverage profile for spike in fastqs

2

Hello @yunfeiguo I was able to successfully run varsim_multi.py and generate fastq with variants "spiked in" from dbsnp snps. However, the coverage of the samples looks very funky! see how...

Mechanical ventilation start and end times

1

Hello, I am trying to figure out how to capture mechanical ventilation start and end times. I understand that the closest would be the: https://github.com/nus-mornin-lab/oxygenation_kc/blob/master/data-extraction/eICU/eicu_oxygen_therapy.sql However, that specific codeblurb is...