Jason Leong

icon company Research Center for Integrative Evolutionary Science, SOKENDAI icon location Tokyo icon location Evo-Devo (evolutionary developmental biology). Bioinformatics. Previously Tsinghua University → University of Tokyo; Currently RCIES, SOKENDAI

Results 4 issues of Jason Leong

Unclear instructions for integration with SCTransform-ed data (SeuratV5)

4 comment

I've been struggling with the recommended procedure to perform multi-sample integration with a SCTransform-ed dataset. I found that the recommended instructions (i.e. the code) are scattered across multiple pages, and...

documentation

About Input Data Type

Hi, We are trying to calculate expression distances based on your proposed model (in Gu et al. 2013) with our datasets in TPM. However, we found that your "TEconstruct()" function...

Unable to run Scrublet in v1.10

3 comment

### Please make sure these conditions are met - [X] I have checked that this issue has not already been reported. - [X] I have confirmed this bug exists on...

Bug 🐛

Package dependency problem on NumPy

Dear `velocyto` developers, I installed `velocyto` fresh and encountered a package version conflict with `NumPy`. I followed the instructions on the [installation page](https://velocyto.org/velocyto.py/install/index.html#install-using-conda), but when I ran the software with...