Jasmin Frangenberg

Updating antiSMASH to most recent bioconda version 6.1.0. ## PR checklist - [x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or...

Update antismash-lite to the most recent antiSMASH version 6.1.0. ## PR checklist -[x] This comment contains a description of changes (with reason). - [x] If you've fixed a bug or...

This is a suggestion to add the tool [fARGene](https://github.com/fannyhb/fargene/) to the hAMRonization tool list. fARGene detects AMR genes based on pre-defined HMM models (provided together with the tool). It would...

Mention AMPcombi and DRAMP database in usage.md

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### Description of feature On the current dev branch, AMPcombi and how to provide its DRAMP database with `--amp_ampcombi_db`, is not mentioned in the usage.md (as is for all other...

### Description of feature [Resfinder](https://github.com/nf-core/modules/tree/master/modules/nf-core/resfinder/run) was just added to modules – let's include it in funcscan!

### Description of feature Optimize [this usage section](https://nf-co.re/funcscan/1.1.3/docs/usage#antismash-1) in the docs: - Clarify what is necessary for the user to prepare for `--bgc_antismash_databases` and `--bgc_antismash_installationdirectory` parameters. - Make clear what...

### Description of feature This is a feature request to add an updated and well maintained version of prodigal called [Pyrodigal](https://github.com/althonos/pyrodigal). - It has exactly the same functionality as prodigal...

Release PR for 2.0.0

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### `Added` - [#322](https://github.com/nf-core/funcscan/pull/322) Updated all modules: introduce environment.yml files. (by @jasmezz) - [#324](https://github.com/nf-core/funcscan/pull/324) Removed separate DeepARG test profile because database download is now stable. (by @jasmezz) - [#332](https://github.com/nf-core/funcscan/pull/332) &...

### nf-test wishlist - [ ] have at least one test profile for prodigal: At the moment, we don't test if `prodigal` actually works, because its wrapper tool `pyrodigal` is...

Minor formatting error on website docs

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**Describe the bug** Small formittag error here: https://nf-co.re/docs/checklists/pipeline_release#steps-to-release  **To Reproduce** Steps to reproduce the behavior: 1. Go to https://nf-co.re/docs/checklists/pipeline_release#steps-to-release 3. Scroll down to text from above screenshot 4. See...