Javier Antúnez Sánchez

icon company University of Warwick icon location PhD student and wannabe bioinformatician

Results 5 issues of Javier Antúnez Sánchez

error with `agat_sp_compare_two_annotations.pl`

6 comment

I tried to compare to GTFs created with gffread or AGAT. When running `agat_sp_compare_two_annotations.pl` I got the following error `Use of uninitialized value in numeric lt ( Accessing the feature...

bug

Adding more than 2 heatmaps side-by-side not working

4 comment

Hello, Thank you for the useful package! I am trying to add heatmaps side by side with the `+` function of ComplexHeatmap, but it doesn't work if it is more...

`--skipNonCoveredRegions`/`--skipNAs` not working for `bigwigCompare` in sparse data

Hello, I have DNA methylation bigwigs with single cytosine resolution and I am trying to reduce the size of the files by averaging the methylation values across bins. I found...

Query about blacklists

1 comment

Hello, Thank you for developing this tool, I have found it really useful! I was wondering if you could clarify that use of the `--blacklist` and `--bedsubtract`, in particular if...

Feature request – add support for CSI (`*.csi`) BAM indices

Hello, Thank you for developing BAMscale, it has become my go-to tool for generating bigwigs. While processing a large wheat ChIP-seq dataset I ran into a limitation that I hope...