J Andrew R Farrell
J Andrew R Farrell
ok, i’m glad you have it working on the original machine, so we know RUFUS works for you. The snag you are running into is in the transfer your are...
Try changing line 12 of RUFUS/scripts/RunJellyForRUFUS.sh from JELLYFISH=“$RDIR/bin/externals/jellyfish/src/jellyfish_project/bin/jellyfish" To JELLYFISH="$RDIR"bin/externals/jellyfish/src/jellyfish_project/bin/jellyfish If the // is the problem that will fix it. It's never caused a problem before but that would fix...
Ok it appears for some reason that jellyfish executable isn’t runnable after the transfer, its odd were just getting a path doesn’t exist error. Let's try making jellyfish on the...
Ok, lets go one more step back: cd RUFUS/bin/externals/jellyfish/ rm -rf jellyfish_project tar -xvf jellyfish-2.2.5.tar.gz mv jellyfish-2.2.5 jellyfish_project cd jellyfish_project mkdir bin ./configure --prefix=$(pwd)/bin make ===================================== Andrew Farrell PhD Director...
There appears to be a problem with your c compiler, I would ask you sys admin about that, you could also try without loading gcc/4.9.2 and see if that works....
Sorry, no we don’t have a docker image yet. ================================= Andrew Farrell PhD Director of Research and Science Department of Human Genetics USTAR Center for Genetic Discovery Eccles Institute of...
Sorry I missed that email, things have been crazy here with Covid stuff. The build definitely needs the internet sorry. We pull allot of the dependencies straight from GitHub when...
Greater than 4.9.2 should be fine but I haven’t tested it extensively. ================================= Andrew Farrell PhD Director of Research and Science Department of Human Genetics USTAR Center for Genetic Discovery...
you need to be in the directory RUFUS/testRun/ to run the test. Sorry about that, I should make that clearer in the documentation. ===================================== Andrew Farrell PhD Director of Research...
I see a couple of errors going on you’ll want to fix. There seems to be an error with your perl install, Ive never seen these errors and not sure...