J Andrew R Farrell

This project is still under development, but you will find script files that should run everything in RUFUS/scripts/. RunRUFUS.HumanTrio.sh should run a trio analysis start to finish. What type of...

yeah, tumor normal is what you should use for mutant vs wild type On Thu, Jun 16, 2016 at 2:36 PM, galapah [email protected] wrote: > I am running scripts/RunTumor.sh now....

do you have a reference for the plant your using? If so you will need to change that in OverlapBashMultithread.sh to get a VCF. if you don't you just want...

yup, that is correct. Good point, i'll add something about that to the documentation On Wed, Jun 12, 2019 at 1:36 PM Andrew wrote: > Hi, > > Can you...

Actually, the genotyping in RUFUS is not very sophisticated yet and I wouldn't worry about removing those. Have you looked at any of these in IGV? If a call is...

Thanks for letting me know about this. Rufus interpret is segfaulting because it’s not getting any input from OverlapRegion2. Its on the list of exceptions to handle when things go...

Glad Rufus has been working for you, sorry about the slowdown, there’s definitely something off it shouldn’t take that long. The —cr option should not slow down Rufus that much,...

It looks like the problems are these lines ./../runRufus.sh: line 469: /usr/bin/time: No such file or directory ./../runRufus.sh: line 469: /usr/bin/time: No such file or directory ./../runRufus.sh: line 472: /usr/bin/time:...

I just pushed an update to github. If you don't want to repull and build since your on a system with no internet, you can just remove all the time...

It looks like jellyfish didn’t build for some reason, can you delete your bin folder and redo the cmake and build steps and send the full output to me? Sent...