ruby-ensembl-api

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Hi Guys, I've installed the gem and tried the following; require 'ensembl' include Ensembl::Core DBConnection.connect('homo_sapiens',50) Which results in the following error message. /usr/local/lib/ruby/gems/2.1.0/gems/activerecord-4.1.6/lib/active_record/dynamic_matchers.rb:26:in `method_missing': undefined method`set_primary_key' for #Class:0x007f7310cdea08 (NoMethodError) from...

moss-on3

Support for releases without the stable_id tables

1

Hi Jan, I just added code to fix the find_by_stable_id functions and stable_id properties in exon, gene, transcript and translation, to support the changes introduced in schema 65. I ran...

homonecloco

undefined method `more_results' for #<Mysql>

6

I'm starting to test the Ensembl API, on OS X 10.6.8, using ruby 1.8.7 (2010-08-16 patchlevel 302) [i686-darwin10.4.0]. I'm reasonably experienced in Ruby but not in Rails. I just installed...

agrobertson

Missing the mysql2 gem

2

With ActiveRecord 3, I get the following error when trying to connect: /Users/jason/.rvm/gems/ruby-1.8.7-p302/gems/activerecord-3.0.3/lib/active_record/connection_adapters/mysql_adapter.rb:22:in `mysql_connection': !!! Missing the mysql2 gem. Add it to your Gemfile: gem 'mysql2' (RuntimeError) I was able...

sciguy

Hia, I saw that the translation returned does not use the exon phase information for the translation (as in partially predicted genes starting in non-zero phases, so the first few...

epaule