translation of genes that don't start in phase 0

[epaule]

Hia,

I saw that the translation returned does not use the exon phase information for the translation (as in partially predicted genes starting in non-zero phases, so the first few bp of the translation should belong to the "previous" exon).

I got a crude hack around that, which I can put it on github if you want to have a look if it makes sense to add to the main repo.

... and the activerecord throws deprecation warnings

Michael