Jan Petr

Population mask and tissue input check

1

### Description Population module tissue masking and atlases sometimes creates an error when mask and tissue input doesn't match. This should be catched and correctly reported. And not crashing the...

TestDataSet

3

### Description Has several errors that need fixing ### Tasks - [x] Fix Siemens_PCASL_3DGRASE_VE11C_DEBBIE_2 import on Luna - done in issue #1800  [BEA: I can't move past the import...

DEBBIE import on luna

1

### Description Fix Siemens_PCASL_3DGRASE_VE11C_DEBBIE_2 import on Luna  ### Tasks - [ ] Fix _xyz_ in function `xASL_[abc]_...` ### How to test Optional: insert description about how to test the...

### Description HENK: Native & standard space processing does not have the same steps. E.g., the expansion is missing for native space, where it is also essential that we expand,...

### Description There's a new DCMTK version from February 2024, not only it should work better and have a better ASL support, but it should also work on the new...

### Description In Ghent reproducible data, they have TR for M0 = 2300ms and for session 2 TR=300ms, 1300ms, 2300ms. Despite we seems to be correcting for it and selecting...

### Description TokenOrder matching with folderHierarchy isn't clear in the documentation. Check also other things in the documentaiton about import. ### Tasks - [ ] Fix _xyz_ in function `xASL_[abc]_...`...

### Description The resolution estimation needs to be revisited inside xASL_init_DefaultEffectiveResolution.m ### Tasks - [x] Fix code on line 136 of xASL_adm_DefineASLResolution to qnt = sort(imCBF(~isnan(imCBF),'ascend'))) a39081d3 - [x] If...

This is mainly the function DICOM2JSON that reads a lot of DICOMs, which should actually be quite fast due to the DCMTK, so the bottleneck must be in how the...

### Description Convert pseudo-BIDS of OASIS to real BIDS. Follow-up on issue #572 ### Requirements - The NII2BIDS will be simplified so it could be used for the conversion :+1:...