Jan Petr

Discussion Henk+Jan: We need to revamp this to avoid loading the whole thing to the memory. 1. We will load NIfTIs 1 by 1 and add them to the corresponding...

I need some more information about this dataset @HenkMutsaerts

Sorry for unclear question. I need *at least some* information. There's zero information :) I did check the FlavorDatabase - the whole Canon folder and the whole branch - and...

New   

Is this problem still relevant? Or we can delete branch and commits as we are not able to find and reproduce the error?

HENK: For DEBBIE LCBC: ``` {"folderHierarchy":["^(sub-\\d*)$","^.*(ASL-M0protocal|M0|Hd4|Hd8).*(caipi.*\\.01|_dir-RL_MEM.*\\.013)$"], "tokenOrdering":[1,0,3,2], "tokenSessionAliases":["ASL-M0protocal|Hd4|M0","ASL_1","Hd8","ASL_2"], "tokenScanAliases":["^(perf_DEBBIE|debbie)","ASL4D","^(perf_fme|fmap_debbie)","M0"], "bMatchDirectories":true} ``` becomes: ``` {"folderHierarchy":["^(sub-\\d*)$","^.*(Hd4|Hd8).*(caipi.*\\.01|M0_dir-RL_MEM.*\\.013|M0_dir-LR_MEM.*\\.013)$"], "tokenOrdering":[1,0,3,2], "tokenSessionAliases":["Hd4","ASL_1","Hd8","ASL_2"], "tokenScanAliases":["caipi.*\\.01","ASL4D","M0_dir-RL_MEM.*\\.013","M0","M0_dir-LR_MEM.*\\.013","M0_RevPE"], "bMatchDirectories":true}

HENK: And the following for DEBBIE HZDR: ``` {"folderHierarchy":["^(sub\\d)$","^(HAD4|HAD8|M0|T1)"], "tokenOrdering":[1,0,2,2], "tokenSessionAliases":["HAD4|M0|T1","ASL_1","HAD8","ASL_2"], "tokenScanAliases":["^HAD4|HAD8","ASL4D","^T1$","T1w","^M0$","M0"], "bMatchDirectories":true} ``` becomes ``` {"folderHierarchy":["^(sub\\d)$","^(HAD|M0|T1)(4|8)"], "tokenOrdering":[1,0,3,2], "tokenSessionAliases":["4","ASL_1","8","ASL_2"], "tokenScanAliases":["^HAD","ASL4D","^T1$","T1w","^M0$","M0"], "bMatchDirectories":true} ``` Note how tokens are not reused and the...

HENK: Just checked with Bea, and she agreed with me to change the following (Neuro-BMC Singapore): ``` {"folderHierarchy":["(\\d{3})$","scans","\\d{1,2}.*(SAG|T2|Encoded_Images|-ss).*(Had04|Had08|TE00_TI2000|MPRAGE|FLAIR)","^resources","^DICOM","^files"], "tokenOrdering":[1,0,3,2], "tokenSessionAliases":["MPRAGE","","FLAIR","","Had04","ASL_1","TE00_TI2000","ASL_1","Had08","ASL_2"], "tokenScanAliases":["(Encoded_Images)","ASL4D","(-ss)","M0", "(T2)","FLAIR","(SAG)","T1w"], "bMatchDirectories":true} ``` to ``` {"folderHierarchy":["^NEURO-(\\d{3})$","scans","^\\d+.*(MPRAGE|FLAIR|Encoded_Images|-ss.*TI2000).*(Had04|Had08)","resources","^DICOM","^files"], "tokenOrdering":[1,0,3,2], "tokenSessionAliases":["^Had04$","ASL_1","^Had08$","ASL_2"], "tokenScanAliases":["^Encoded_Images$","ASL4D","^-ss_.*TI2000$","M0",...

11x11 cell array {'Data' } {'mean_qCBF_TotalGM'} {'median_qCBF_To...'} {'median_qCBF_De...'} {'CoV_qCBF_TotalGM'} {'GMvol' } {'WMvol' } {'CSFvol'} {'PipelineCompleted'} {'TC_ASL_Registr...'} {'TC_M0_Registra...'} {'GE_3Dspiral_T1...'} {'2.910%' } {'1.250%' } {'0.001%' } {'0.156%' } {'0.000%'} {'0.000%'} {'0.000%'} {'0.000%'...

ans = 11x11 cell array Columns 1 through 10 {'Data' } {'mean_qCBF_TotalGM'} {'median_qCBF_To...'} {'median_qCBF_De...'} {'CoV_qCBF_TotalGM'} {'GMvol' } {'WMvol' } {'CSFvol'} {'PipelineCompleted'} {'TC_ASL_Registr...'} {'GE_3Dspiral_T1...'} {'1.949%' } {'0.274%' } {'0.723%' } {'0.379%'...