James Schinner

Thanks for the quick reply folks!

Hey Mark, I've added a new branch. It'd be great if your able to set up the development environment as per the README, that will no doubt highlight potential configurations/set...

Hi Mark, Yes, I took a look around (worked perfectly, thank you). I realized the Apache config is a little different than what I am used to, seems like this...

It currently looks something like this: 

That's great, were you able to download all data? I believe there are 21742 study's currently processed in dee2 out of the ~270,000 on NCBI (according to big query). My...

Hey Mark, Did you manage to get the study abstracts using E-UTILS? I've just created a new repository: https://github.com/jamespeterschinner/sra_metadata_parser Aimed at solving this particular issue (and broader contexts). At the...

No problem Mark, Yeah I think that should be a pretty straight forward task. I want to include all the run metadata in this as well. I'm in two minds...

I added the extraction code for the sample's SRS, species, description and status Running ```Bash time ./target/release/sra_metadata_parser -f NCBI_SRA_Metadata_Full_20201006.tar.gz -d ./data real 17m25.726s user 7m37.005s sys 0m36.466s ``` Files ```...