James Fifer

icon company University of California San Diego icon location Postdoc at UCSD in Rose Lab jfifer[at]ucsd.edu

Results 2 issues of James Fifer

pixy doesnt handle masked haplotype data?

Hello, thanks for making such a useful tool! I am trying to run pixy to calculate pi on a masked vcf file that will often have one haplotype masked (i.e....

bug

Dtrios Assertion `p_S1a >= 0' failed

Hello, Thank you for making such a useful tool! I am able to run Dinvestigate, but not Dtrios using this [vcf ](https://github.com/jamesfifer/AstrangiaOculinaPopGen/blob/main/RIoc.new.vcf) and this [sets file](https://github.com/jamesfifer/AstrangiaOculinaPopGen/blob/main/SETS.txt). When running Dtrios I...