slideflow
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jamesdolezal
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
## Description sf.DatasetFeatures is not working for a zip file even though I export packages before running sf.DatasetFeatures. %sh export SF_BACKEND=torch export SF_SLIDE_BACKEND=cucim export SF_ALLOW_ZIP=0 OSError: [Errno 95] Operation not...
In line with #384, I wonder if the requirement ```python pandas
## Description The various requirements specs note `ninja` as a requirement of this package, but I don't see `ninja` being necessary to execute it, since it only appears inside those...
## Description There is a type error when I try to utilize ctranspath as the extractor for build_feature_extractor extractor=['ctranspath'] for ex in extractor: exm = build_feature_extractor(ex, tile_px=299) TypeError: 'int' object...
These addition allow to specify a list RoI labels that shuold be treated as issues (artifacts), meaning that should be excluded in the tile extraction. Inside `wsi` the artifact RoIs...
Ensure that `bags` is a `np.ndarray` with each element as of type `list`
## Description ## To Reproduce Steps to reproduce the behavior: 1. Choose 'blur' for qc in the tile extraction step: ``` dataset.extract_tiles(qc='blur', # ‘otsu’, ‘blur’, ‘both’, or None # qc.GaussianV2()...
Updating functions to select equal number of features from each tensor in a bag
Other libraries have updated to pin >=0.13. Based on the [seaborn changelog](https://seaborn.pydata.org/whatsnew/index.html) I can't see any obvious reason for the strict pin.
## Description Repository README [says](https://github.com/jamesdolezal/slideflow?tab=readme-ov-file#-license) > This code is made available under the GPLv3 License and is available for non-commercial academic purposes. but GPLv3 does not allow restricting usage. ##...
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Deep learning library for digital pathology, with both Tensorflow and PyTorch support.