slideflow
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jamesdolezal
Deep learning library for digital pathology, with both Tensorflow and PyTorch support.
## Feature It would be helpful for the Slideflow user to be able to include their own tile selection methods in the Slideflow pipeline. This would allow them to have...
## Feature Currently, the UQ implementation is built around the assumption that the target is a binary outcome, although some flexibility for multi-class uncertainty has already been implemented. This needs...
## Feature The Gaussian blur augmentation in the PyTorch backend differs slightly from the Tensorflow implementation, as it uses `torchvision.transforms.GaussianBlur`, requiring odd-numbered kernel sizes only. It is also much slower,...
## Description I encountered a ValueError when using the transmil MIL method and histossl Extractor method in my code. The error occurs when calling the train_mil function. The relevant code...
Added a simple function that filters bags using a dataframe Added a simple function to get a represantative tile for each slide
## Description I encountered an issue when attempting to use multi-GPU processing with a feature extractor in my code. The problem occurs because the multiprocessing starts from the beginning of...
This branch was branched off of https://github.com/jamesdolezal/slideflow/tree/fixes . Merging #351 first is advisable so that all changes here are relevant to time-to-event CPH models. # Notes: ## Loss For the...
`b29abea` Fix a warning in slideflow studio that happens when a remainder is 0 `4a6a8db` is a temporary fix for `TransMIL` which would not work because it does not currently...
I have followed the installation guide and pulled an image using: `docker pull jamesdolezal/slideflow:latest-torch` then I ran the command: ``` docker run -it --rm \ -e DISPLAY=$DISPLAY \ -v /tmp/.X11-unix:/tmp/.X11-unix...
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Deep learning library for digital pathology, with both Tensorflow and PyTorch support.