James Casbon

Someone should really add vcf4.2 test cases first. We would then have something to shoot for.

Yes, I think you are right. Do you have a patch?

Can you let me know your python version? Can you try installing cython?

Can you paste the entire output of python setup.py install, please? And the output of tree, if possible

Can you try runing cython on vcf/cparse.pyx? This should generate vcf/cparse.c and then the build will happen. Perhaps I should just check in that file. I can't understand why it...

No, I think this is a real issue! Need to work out why cython failed to be pulled in.

@osborne6 is that with or without cython installed? And by same error, you mean the missing cparse.c?

This seems to be a setuptools/cython job. It doesn't do the cythonizing of the pyx file.

Still can't get this to be repeatable. Running cython manually seems to be the way to do it.

Are you on RHEL? which version of setuptools have you got?