jamesamcl

Thanks @giraygi , I wasn't aware and that's super interesting. For future reference (mainly for @henrietteharmse) I think it would be a fairly major change in OLS4 to go back...

@henrietteharmse please can we have one testcase that includes both types of properties on one individual? I have an implementation of this but not sure it works for all cases.

This may be fixed but needs testing

This would be a separate dataset. I’ll chat with you when I’m back from leave.

Just to jot some notes down from previous chats with @henrietteharmse Currently OLS is backed by 2 Solr cores (1 for autocomplete, 1 for entity search) and 1 Neo4j graph....

> While an interesting avenue, I have had plenty of trouble with stuff like that in the past; I don't want to deter, just advice that approaching anything in this...

We are lacking biomedical use cases. From John Graybeal: > if you go to https://bioportal.bioontology.org/ontologies and click on SKOS under the Format facet, you will see a wide variety to...

The ols3 jstree endpoint is for a term, not an ontology. So I'm a bit confused as to why it has `preferredRoots` as a parameter at all. OLS3 https://github.com/EBISPOT/OLS/blob/4b54a687386c255ba6457f8db689e2f9d7c3a924/ols-neo4j/src/main/java/uk/ac/ebi/spot/ols/neo4j/service/AbstractJsTreeBuilder.java#L307-L316 ```java...

(update: I guess because it includes the ancestors up to the preferred root)

Couldn't resist implementing this one as it was a very minor change with a visible impact on core OBO ontologies. OLS3: OLS4: IRIs in text are also now handled by...