jamesamcl

Hi, typing from my phone as I’m away camping without access to a computer. For us (biocurators at EBI) mapping from term to term or string to term are both...

Late to the discussion here. These distinctions are clearly very difficult to make, especially with things like "gene encodes protein" (which fyi is not 1:1 @matentzn). It's not a formal...

Significant column ordering sounds dangerous as it enables/encourages consumers to ignore the headings!

> it is totally fine that an ontology imports a non-rdfxml import This in itself is fine, but what I don't think is fine is that the HTTP headers returned...

Looking at this: Is it necessary/useful to have distinct EFO terms for every variant of ceramide or should these be mapped to "ceramide measurement"? There are existing examples in GWAS...

I went through the whole list manually to see if anything maps to ChEBI (lexical matching with OLS4 search and manual review). Out of 146 lipids: - 45 map to...

It just says: ``` n cr Coerce ```

I just hit this problem too when using `nextflow -resume`: ``` Command exit status: 1 Command output: (empty) Command wrapper: ln: failed to create symbolic link 'prop_summary.json': File exists ```...

We seem to have already found lipids that aren't in swisslipids: https://github.com/EBISPOT/efo/issues/1924#issuecomment-1571972259

Specifically this file: https://github.com/EBISPOT/ols4/blob/dev/dataload/rdf2json/src/main/java/uk/ac/ebi/rdf2json/annotators/ShortFormAnnotator.java