James P

icon indicating a website link https://github.com/CFSAN-Biostatistics

icon company FDA CFSAN icon location Maryland USA icon location Director of Biostatistics and Bioinformatics Staff at FDA/CFSAN. Foodborne pathogen genomics. Check out https://github.com/CFSAN-Biostatistics

Results 2 issues of James P

Reverse compliments

1 comment

Is there a flag to have `famsa` evaluate whether reverse complimenting a sequence will result in a better alignment score? Similar to `--adjustdirection` within [mafft](https://mafft.cbrc.jp/alignment/software/adjustdirection.html).

question

One-against-all comparison

1 comment

Curious if there is a way to perform a one-against-all comparison rather than all-against-all? For example, I have an assembly from X and want to compare it to a collection...