Jake Yeung

Hi, First of all, awesome job implementing this on the SGE. in `misopy/cluster_utils.py`, the function `run_SGEarray_cluster` writes a cluster script with qsub parameters. This function writes as one of those...

Simulate SDE with white noise?

3

Hi, I was wondering if it's possible to simulate SDEs using white noise, rather than the brownian motion (e.g. `brownian_motion = VirtualBrownianTree(t0, t1, tol=1e-3, shape=(), key=jrandom.PRNGKey(0))`) shown in the docs?...

Add changepoint kernel

6

## Type of changes - [ ] Bug fix - [x] New feature - [ ] Documentation / docstrings - [ ] Tests - [ ] Other ## Checklist -...

jlab_addpath.m wants to add jdata but I don't have it

2

Hi Jonathan, Nice package and thanks for sharing your MATLAB code. I am trying to install jLab, but the jlab_addpath.m seems to want to add a 'jdata' module that I...

It would be great to use a trained glmpca to infer factors from new data. Possibly like: `new_factors

Does the input file handle replicates?

1

Hi, I was interested in trying out this clustering package. Does the input file handle multiple replicates per time points? Or is each column the mean of several replicates at...