jakepalmer

Simple use case examples to resolve #373

4

I've put together some example use cases as suggested in #373 by @dbkeator. I've included a single T1 nifti (my own defaced scan so no problem with permissions/privacy etc) to...

Freesurfer's ```nu_correct``` command isn't found when calling ```mri_nu_correct.mni``` while using ```neurodocker-minify```. When ```mri_nu_correct.mni``` is called from inside the docker container without the minify command it completes without error. I've read...

Check if required inputs exist in pipeline.sh

1

Added a check for existence of required inputs to `pipeline.sh` based on required input in README and assuming directory structure of docker/singularity. Currently, if the b0 input doesn't match exactly...