Jacob Beal
Jacob Beal
The BioBrick suffix in pSB1C3 (https://synbiohub.org/public/igem/pSB1C3/1) has location 2051 - 2072. The sequence of pSB1C3, however, is only 2070 bp long.
I ran into validation errors that trace back to some bad sequence encodings in SEVAhub. This doesn't seem like the right place to report them, but there is no other...
For the 2017 interlab parts http://parts.igem.org/Part:BBa_J364000, http://parts.igem.org/Part:BBa_J364001, and http://parts.igem.org/Part:BBa_J364002, I cannot obtain SBOL conversions. Instead, I get sent to a SynBioHub error page, e.g.: > Error: getType: https://synbiohub.org/public/igem/BBa_J364001 not found...
Two of the SD2 strains appear unable to be retrieved or written on SynBioHub in any reasonable time, though their non-recursive retrieval seems to be working: https://hub.sd2e.org/user/sd2e/design/Strain_2_MG1655_Genomic_PhlF_Gate/1 https://hub.sd2e.org/user/sd2e/design/Strain_3_MG1655_Genomic_IcaR_Gate/1 This is...
The SBOL format entry (http://edamontology.org/format_3725) currently applies only to the SBOL2 RDF/XML format, and not the SBOL3 format, which allows all forms of RDF. Per the discussion on https://github.com/SynBioDex/SBOL-specification/issues/488, can...
### Setup I am reporting a problem with Biopython 1.8.1, Python version CPython (3.12.0) , and operating system Microsoft Windows Server 2022, 10.0.203, datacenter (i.e., image `windows-2022` in GitHub actions)....
## Describe the bug Issue #578 was closed with a suggestion that it could be addressed through use of actions/setup-node. This suggestion does not appear to work: here are failures...
In biology, centrifugation is often specified in multiples of g rather than m/s^2. Could OM-2 please add a factored unit for g as an alternative? This would be a conversion...
The Bioinformatics class (http://purl.obolibrary.org/obo/NCIT_C17964) contains several types of omics, but is missing other widely used types. Could we please get terms for: - Transcriptomics - Epigenomics - Metagenomics - Glycomics...
The synbiohub.org server is down right now - it fell over in the middle of me retrieving a few hundred part descriptions from the server, so my suspicion is that...