Jake Pennington

Thanks, that was a bug. There was some code forcing the y-positions for the templates to be integers, which I guess hadn't come up until now. You can pull the...

Vertical spacing was set based on `dmin // 2` (floor division, i.e. rounded to an integer) while horizontal spacing was set by `dminx / 2`. So for `dmin = 350`...

You just need to install from source to get the latest code changes if you don't want to wait on a new pip version. There are instructions for that at...

Version 4.0.4 should handle this now, I'll close this after getting feedback from people using it on their data.

@kipkeller Can you please confirm if you're using the latest version of Kilosort4 (v4.0.5), and reinstall if not (`pip install --upgrade kilosort`). This looks like it's coming from an older...

@paolahydra Sorry, I don't understand the problem. Kilosort does not re-order channels, they're indexed in the order provided in the probe file. The `probe_table_ProbeA.csv` you linked shows the same ordering....

You might need to do `pip install kilosort` again without the `--upgrade` part then, that should have installed `qtpy` as well.

Yeah, try that, just `qtpy` with no version. It's just odd that it didn't do that automatically.

Re: q2, the ordering of the contacts does not matter, so that is not a problem. The x,y positions are treated the same whether the contacts are listed next to...

I've heard back from several people that multi-shank sorting is working fine, so I'm going to close this one now. If anyone encounters more issues related to multi-shank recordings, please...