Jake Pennington

@ZhongRenNeuroscience There will be an option to do this without modifying the probe file with the next PyPi release. In the meantime, you can accomplish that by making a separate...

@mikemanookin I'm guessing this is related to some other issues we've found with multi-shank and 2D MEA probes. Am I reading your description correctly, that each channel you're recording from...

Okay, then yeah this is related to a known issue with how we've been determining template placement and grouping. The fix is working well on multi-shank probes so far, but...

Thanks, this was helpful! The changes I made to address this are merged now, and live on pypi as version `4.0.4`. Handling 2D arrays automatically is still a work in...

Hmm okay, thanks. As for parameter settings: you could try reducing the batch size to 40000 (2s of data), though I doubt that will be enough to handle the memory...

Also, would you be able to paste in the rest of the output you got from sorting, before the error happened? I'd like to see how many spikes and clusters...

That's great! Thanks for letting us know. As for the spike gaps, I don't think changing `dmin` or `dminx` would affect that. If you set `max_channel_distance = 10` like I...

Hmm okay. I'm not sure then, any ideas @marius10p?

Sorry for the delay. I looked at this again with Marius, and we determined that the gaps between contacts are not surprising given the spacing. I.e. any spikes originating in...

The probe file you provide to Kilosort should only include information about the channels that you actually recorded data from.