Jacob DeRosa

@danlipsa I have small changes to Dockerfile, tools/run_danesfield.py, and the VTK recipe that I need to merge. Otherwise this looks good

@NourSoltani It doesn't look like your input_Jacksonville.ini is in your config directory (that you mounted to /configs)

@NourSoltani Try putting the _source /opt/conda/etc/profile.d/conda.sh && conda activate core3d && python /danesfield/tools/run_danesfield.py --image --vissat /configs/input_Jacksonville.ini_ part of the command in double quotes

@NourSoltani this often happens when there is insufficient GPU memory to run the VisSat step. There are ways to lower the GPU requirements if you are interested, as well as...

The processing time for clean_data seems reasonable but the rest are very quick. It does suggest VisSat couldn't find the images. Are the images organized in the right directory structure...

I recommend checking the log files for the clean_data and crop_image steps. You can find them at outdir/vissat/logs. They will have more clues as to what's going wrong here. Post...

It looks like GDAL is unable to crop the input images (see the errors in log_crop_image.txt). Can you check to see if /workdir/Jacksonville/vissat/images is empty, or if the links in...

@danlipsa I'll add that along with my own changes after this is all merged. For now this looks good to me