jackzhong1995

What's the best analysis process with 1.HiFi long reads; 2.Hic reads; 3.Paired-end reads (Trio)

2

Hello! When i have 1.HiFi long reads; 2.Hic reads; 3.Paired-end reads (Trio).Is there any flowchart comand line to get the best assembly?

Hi， I would like to know which threshold (the sixth colunm "QUAL") is appropriate to use for downstream further filtering of SVs in genotyped svtyper vcf file. 

[GangSTR-2.5.0] ERROR: Error extracting read length

1

Dear all, I got the error "[GangSTR-2.5.0] ERROR: Error extracting read length" when I run GangSTR. I try to found solution but noway. First, I make sure the reference matches...